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Sequencing of 10000 TB genome samples completed

Context and Background

  • Tuberculosis (TB) remains a major public health challenge, with India accounting for 28% of global new TB cases.
  • The Dare2eraD TB initiative was launched in 2022 under the Department of Biotechnology (DBT) to sequence 32,500 TB genome samples.
  • 10,000 samples (one-third of the target) have been sequenced so far, with full sequencing expected by October 2025.
  • This initiative aligns with India’s target to eliminate TB by 2025, set at the 2018 End TB Summit, ahead of WHO’s 2030 target.
  • Genome sequencing aims to:
    • Identify drugresistant TB strains.
    • Capture unique genetic features of Mycobacterium tuberculosis in India.
    • Improve diagnostics and treatment strategies using AI-powered analysis.

Relevance : GS 2(Health) ,GS 3(Science )

 Key Findings from Sequenced Samples

  • 7% of sequenced TB cases show resistance to a single drug, highlighting the growing challenge of drug-resistant TB (DR-TB).
  • Age Profile: Majority of TB cases are in the 18-45 years age group, indicating a high burden among the working population.
  • Comorbidities: Many TB patients were also diabetic and underweight, reinforcing the link between nutrition, metabolic disorders, and TB susceptibility.
  • Prevalence: India had 1,990 cases per million in 2022, down from 2,370 per million in 2015, but still far from the 1 per million ‘elimination’ benchmark set by WHO.
  • Latent TB Reservoir: The number of undiagnosed, asymptomatic TB carriers could be as high as 3,000 per million, contributing to continued transmission.

Impact and Implications

  • Better TB Diagnostics & AI Integration
    • Genome sequencing data, combined with AI models, can help reduce TB diagnosis time from three weeks to one week.
    • Faster identification of drug-resistant strains will improve treatment protocols.
  • Personalized Medicine & Targeted Therapy
    • Understanding genetic variations in TB bacteria will aid in the development of region-specific drug treatments.
    • Potential to develop genome-based rapid diagnostic kits.
  • Public Health Policy & TB Eradication Strategy
    • Data-driven approaches will help in better allocation of resources to high-TB-burden areas.
    • Policy interventions needed to address nutrition and diabetes as risk factors for TB.
  • Challenges in TB Eradication
    • Eliminating TB by 2025 is highly ambitious, given current prevalence rates.
    • The presence of latent TB cases means transmission will continue unless preventive treatment strategies are expanded.
    • Multidrug-resistant TB (MDR-TB) poses a major challenge due to limited treatment options and higher costs.

Causes and Factors

  • Delayed Diagnostics & Inconsistent Testing
    • Traditional TB detection methods (sputum tests, X-rays) take weeks and may not detect drug-resistant strains early.
    • Limited availability of advanced molecular diagnostic tools in rural India.
  • Drug-Resistant TB Evolution
    • Inadequate TB treatment adherence leads to MDR-TB, where bacteria develop resistance to key antibiotics like Rifampicin and Isoniazid.
    • Self-medication, improper prescriptions, and interrupted treatments contribute to resistance.
  • Nutritional & Metabolic Linkages
    • High TB burden among diabetics and underweight individuals suggests a nutritional and metabolic component in susceptibility.
    • Poor access to balanced diets and healthcare in rural areas exacerbates TB risks.
  • Urbanization & Migration Patterns
    • Overcrowding in urban slums and migrant worker clusters increases TB transmission rates.
    • Inconsistent access to healthcare among migrant populations reduces early TB detection and treatment compliance.

Way Forward

  • Strengthen Genome-Based TB Surveillance
    • Expand TB genome sequencing efforts beyond 32,500 samples for wider genetic mapping.
    • Integrate genome data into national TB control programs for better tracking of resistant strains.
  • Enhance AI-Powered Diagnostic Tools
    • Machine learning models should be developed to analyze genome data and predict drug resistance trends.
    • Promote the use of faster and portable genome-based diagnostic kits at primary health centers.
  • Scale Up Preventive & Early Treatment Measures
    • Mass screening programs targeting high-risk groups (diabetics, undernourished, urban slums).
    • Expand access to preventive therapy for latent TB cases.

March 2025
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